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The 9th Proteomics Methods Forum Meeting

Barts Cancer Institute
London, UK

14-15 June 2012

The Proteomics Methods Forum (PMF) was created to allow researchers in the UK, both academic and industrial, the opportunity to meet one another and to exchange information on any and all methods and techniques relevant to the practice of proteomics. The forum was initiated and is organised by proteomics researchers without affiliation to a particular vendor or group.

It will follow the established format of afternoon sessions on Thursday, finishing at lunchtime on Friday (with user group workshops on the afternoon of Friday 15th June). Please find the schedule below.

The meeting is being organised by Dr Pedro Cutillas from BCI, Dr John Timms from UCL and Dr Andrew Thompson from the ICR.

As with previous meetings, registration is free.  

Online registration (Deadline - 31st May):

Proteomics Methods Forum 2012 Registration
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Draft Programme

Thurs 14 June
12:00-13:20 


Registration & Lunch

13:30-13:40

13:40-14:25


 

14:25-14:45

14:45-15:10

15:10-15:30

15:30-15:50

Opening address: Andrew Thompson, John Timms, Pedro Cutillas

Plenary: Kathryn Lilley, University of Cambridge
Combining stable isotope tagging and label free quantification to get the best of both worlds

Session 1 - Sample handling, fractionation and enrichment

Andrew Holding - MRC Cambridge
Interactions within the E.coli Replisome

Ed Wilkes - Barts Cancer Institute, QMUL
Optimization of TiO2 enrichment for phosphoproteomics

Navin Chicooree - Paterson Institute for Cancer Research, Manchester
The site mapping of SUMOylation: what’s the CRA(K)?

Francesco Lanucara - University of Manchester
Towards a combinatorial analysis of post-translational modifications in the NF-kB system

16:00-16:25

Break

d

16:30-16:50


16:50-17:10


17:10-17:30


17:30-17:50

Session 2 - Quantification

Juan Carlos Rodriguez-Prados - Barts Cancer Institute, QMUL
Analysis of label-free phosphoproteomics

Nick Morrice - The Beatson Institute for Cancer Research, Glasgow
Optimising computer platforms for proteomic informatics 

Jonathan Worboys - Institute of Cancer Research, London
SRM kinase assays 

Bram Snijders - MRC Clincial Sciences Centre & CRUK London Research Institute
How to interpret my SILAC data 

18:00

19:30

Drinks Reception - The Shield @ Charterhouse Square

Dinner

 

 

Friday 15 June


D

09:00-09:20

 

09:20-09:40
 
 

09:40-10:00
 

10:00-10:20
 

10:20-10:40

Session 3 - Instrumentation: Applications from the State of the Art

Andrew Williamson - Stem Cell & Leukaemia Proteomics Lab
University of Manchester
Application of the ABSciex 5600 to leukaemia and stem cell research
 

Janica Auluck - Cancer Studies and Molecular Medicine, RKCSB
University of Leicester
Application of HDMSe in Acute Heart Failure proteomics

Richard Blankley - CADET Centre, Royal Manchester Infirmary
Label-free peptide SRM as a tool in biomarker validation

Manuel Mayr - Cardiovascular Division, King's College London
Title - TBA

Ben Collins - Institute of Molecular Systems Biology, ETH Zurich
SWATH MS: Technical perspectives and applications in interaction proteomics 

10:45-11:15

Break

d

11:20-11:40

a
11:40-12:00


12:00-12:20


12:20-12:40

Session 4 - MS data analysis and handling

Ian Fernley -  MRC Mitochondrial Biology Unit, Cambridge
Challenges, issues and problems in data analysis

James Wright - Sanger Centre, Cambridge
Enhanced Peptide Identification Using Mascot Percolator 

David Martin - University of Dundee
ProPhosSI: Rule based validation of Phospho-MSMS data

Juan A. Vizcaino - EMBL, Cambridge
The PRIDE database and the ProteomeXchange consortium: making easier the
deposition and sharing of MS based proteomics data 

12:45

Meeting closes - Lunch